Intonation between phrasing and accent: Spanish and Quechua in Huari

Are our concepts from prosodic typology, like word stress, pitch accent, head-/edge-prominence, really that tightly linked to individual languages? How are meanings often signaled via intonation in European languages, like information structure and sentence type, expressed in communicative acts between speakers who are bilingual in such a European language, Spanish, and one in which many of these meanings are expressed by morphology, Quechua?